ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

A0A5K4F0J6_F1_nD3 - ECOD Domain | ECOD

ECOD/Domains/A0A5K4F0J6_F1_nD3

A0A5K4F0J6_F1_nD3

UID: 003480829

AlphaFold

Range: 181-305
AlphaFold: AF-A0A5K4F0J6
UniProt: A0A5K4F0J6 (all domains)

Protein: Integrase catalytic domain-containing protein

3D Structure

Loading viewer...

Related Domains

Browse other domains in RT_RNaseH →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRNaseH-like domain in reverse transcriptase(2484.5)

TT-groupRNaseH-like domain in reverse transcriptase(2484.5.1)

FFamilyRT_RNaseH(2484.5.1.2)

Pfam Families

PF17917RT_RNaseH

RNase H-like domain found in reverse transcriptase

ClanCL0219RNase_H

External Links

AlphaFold DB: A0A5K4F0J6 UniProt: A0A5K4F0J6

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 181-305