ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3cmeL1 - ECOD Domain | ECOD

ECOD/Domains/e3cmeL1

e3cmeL1

UID: 000348552

PDB

Range: L:1-150
PDB: 3CME chain L(all domains)
UniProt: P12737 (all domains)
Gene: rpl15

Molecule: 50S ribosomal protein L15P

3D Structure

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Related Domains

Browse other domains in Ribosomal_L27A →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRibosomal protein L13/L15p/L18e/L32e(2490)

HH-groupRibosomal proteins L15p and L18e(2490.3)

TT-groupRibosomal proteins L15p and L18e(2490.3.1)

FFamilyRibosomal_L27A(2490.3.1.1)

Ligands

in contact, ≤ 4 Å

PhenylalaninePHE
drugDrugBank DB00120within 5 Å only
Chloride ionCL
Sodium ionNA

Pfam Families

PF00828Ribosomal_L27A

Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A

ClanCL0588Ribos_L15p_L18e

External Links

ECOD PDB View: 3CME RCSB PDB: 3CME PDBe: 3CME UniProt: P12737

Downloads

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metal

Strontium ionSR

metal

Shown in the structure viewer. Drug annotations from DrugDomain.