ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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UT Southwestern
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A0A5K4EF93_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/A0A5K4EF93_F1_nD2

A0A5K4EF93_F1_nD2

UID: 003489544

AlphaFold

Range: 36-110
AlphaFold: AF-A0A5K4EF93
UniProt: A0A5K4EF93 (all domains)

Protein: Nonsense-mediated mRNA decay protein 1 (Rent1),putative

3D Structure

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Related Domains

Browse other domains in UPF1_Zn_bind →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRING/U-box-like(376)

HH-groupRING/U-box-like(376.1)

TT-groupRING/U-box(376.1.1)

FFamilyUPF1_Zn_bind(376.1.1.14)

Pfam Families

PF09416UPF1_Zn_bind

RNA helicase (UPF2 interacting domain)

ClanCL0229RING

External Links

AlphaFold DB: A0A5K4EF93 UniProt: A0A5K4EF93

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 36-110