ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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A0A5K4FGM8_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/A0A5K4FGM8_F1_nD1

A0A5K4FGM8_F1_nD1

UID: 003499351

AlphaFold

Range: 1-320,346-635,671-745,1356-1405,1431-1615,1671-1735
AlphaFold: AF-A0A5K4FGM8
UniProt: A0A5K4FGM8 (all domains)

Protein: E3 ubiquitin-protein ligase listerin (EC 2.3.2.27) (RING-type E3 ubiquitin transferase listerin)

3D Structure

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Related Domains

Browse other domains in LTN1_E3_ligase_6th →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyLTN1_E3_ligase_6th(109.4.1.880)

Pfam Families

PF22999LTN1_E3_ligase_6th

LTN1 family HEAT repeat region

ClanCL0020TPR

External Links

AlphaFold DB: A0A5K4FGM8 UniProt: A0A5K4FGM8

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 1-320,346-635,671-745,1356-1405,1431-1615,1671-1735