ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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P05090_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/P05090_F1_nD1

P05090_F1_nD1

UID: 003548900

AlphaFold

Range: 21-185
AlphaFold: AF-P05090
UniProt: P05090 (all domains)
Gene: APOD

Protein: Apolipoprotein D (Apo-D) (ApoD)

3D Structure

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Related Domains

Browse other domains in Lipocalin_2 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupLipocalins/Streptavidin(9)

HH-groupLipocalins(9.1)

TT-groupLipocalins(9.1.1)

FFamilyLipocalin_2(9.1.1.11)

Ligands

in contact, ≤ 4 Å

Vitamin A
drugDrugBank DB00162within 5 Å only
DB09130
drugDrugBank DB09130within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF08212Lipocalin_2

Lipocalin-like domain

ClanCL0116Calycin

External Links

AlphaFold DB: P05090 UniProt: P05090

Representative

This domain is classified based on similarity to:

Downloads

Download Domain PDB Download Domain FASTA Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 21-185