ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

Q8ND04_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q8ND04_F1_nD1

Q8ND04_F1_nD1

UID: 003549805

AlphaFold

Range: 6-15,41-79,136-340,411-490
AlphaFold: AF-Q8ND04
UniProt: Q8ND04 (all domains)
Gene: SMG8

Protein: Nonsense-mediated mRNA decay factor SMG8 (Amplified in breast cancer gene 2 protein) (Protein smg-8 homolog)

3D Structure

Loading viewer...

Related Domains

Browse other domains in Smg8_Smg9 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilySmg8_Smg9(2004.1.1.171)

Pfam Families

PF10220Smg8_Smg9

Smg8_Smg9

External Links

AlphaFold DB: Q8ND04 UniProt: Q8ND04

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 6-15,41-79,136-340,411-490