ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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P08397_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/P08397_F1_nD1

P08397_F1_nD1

UID: 003550033

AlphaFold

Range: 12-115,221-240
AlphaFold: AF-P08397
UniProt: P08397 (all domains)
Gene: HMBS

Protein: Porphobilinogen deaminase (PBG-D) (EC 2.5.1.61) (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase)

3D Structure

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Related Domains

Browse other domains in Porphobil_deam →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyPorphobil_deam(7523.1.1.6)

Pfam Families

PF01379Porphobil_deam

Porphobilinogen deaminase, dipyromethane cofactor binding domain

ClanCL0177PBP

External Links

AlphaFold DB: P08397 UniProt: P08397

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 12-115,221-240