ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

P11388_F1_nD4 - ECOD Domain | ECOD

ECOD/Domains/P11388_F1_nD4

P11388_F1_nD4

UID: 003551552

AlphaFold

Range: 716-845
AlphaFold: AF-P11388
UniProt: P11388 (all domains)
Gene: TOP2A

Protein: DNA topoisomerase 2-alpha (EC 5.6.2.2) (DNA topoisomerase II, alpha isozyme)

3D Structure

Loading viewer...

Related Domains

Browse other domains in DNA_topoisoIV →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHTH(101)

HH-groupHTH(101.1)

TT-groupwinged helix domain(101.1.2)

FFamilyDNA_topoisoIV(101.1.2.9)

Ligands

in contact, ≤ 4 Å

Moxifloxacin
drugDrugBank DB00218within 5 Å only
Amsacrine
drugDrugBank DB00276within 5 Å only
Dexrazoxane

Pfam Families

PF00521DNA_topoisoIV

DNA gyrase/topoisomerase IV, subunit A

External Links

AlphaFold DB: P11388 UniProt: P11388

Representative

This domain is classified based on similarity to:

Downloads

Download Domain PDB Download Domain FASTA Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 716-845

drugDrugBank DB00380within 5 Å only

DB00385

drugDrugBank DB00385within 5 Å only

Teniposide

drugDrugBank DB00444within 5 Å only

DB00445

drugDrugBank DB00445within 5 Å only

DB00467

drugDrugBank DB00467within 5 Å only

DB00487

drugDrugBank DB00487within 5 Å only

Trovafloxacin

drugDrugBank DB00685within 5 Å only

Daunorubicin

drugDrugBank DB00694within 5 Å only

DB00978

drugDrugBank DB00978within 5 Å only

Doxorubicin

drugDrugBank DB00997within 5 Å only

DB01059

drugDrugBank DB01059within 5 Å only

DB01165

drugDrugBank DB01165within 5 Å only

Idarubicin

drugDrugBank DB01177within 5 Å only

Podofilox

drugDrugBank DB01179within 5 Å only

DB01208

drugDrugBank DB01208within 5 Å only

Genistein

drugDrugBank DB01645within 5 Å only

DB04576

drugDrugBank DB04576within 5 Å only

DB04967

drugDrugBank DB04967within 5 Å only

DB04975

drugDrugBank DB04975within 5 Å only

DB05022

drugDrugBank DB05022within 5 Å only

DB05129

drugDrugBank DB05129within 5 Å only

DB05706

drugDrugBank DB05706within 5 Å only

DB06013

drugDrugBank DB06013within 5 Å only

DB06263

drugDrugBank DB06263within 5 Å only

DB06362

drugDrugBank DB06362within 5 Å only

DB06420

drugDrugBank DB06420within 5 Å only

DB06421

drugDrugBank DB06421within 5 Å only

DB09047

drugDrugBank DB09047within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.