ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q13509_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q13509_F1_nD1

Q13509_F1_nD1

UID: 003557513

AlphaFold

Range: 1-240
AlphaFold: AF-Q13509
UniProt: Q13509 (all domains)
Gene: TUBB3

Protein: Tubulin beta-3 chain (Tubulin beta-4 chain) (Tubulin beta-III)

3D Structure

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Related Domains

Browse other domains in Tubulin, Misat_Tub_SegII →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupTubulin nucleotide-binding domain-like(2003.1.6)

FFamilyTubulin, Misat_Tub_SegII(2003.1.6.7)

Ligands

in contact, ≤ 4 Å

Epothilone D
drugDrugBank DB01873within 5 Å only
Patupilone
drugDrugBank DB03010within 5 Å only
Ixabepilone

Pfam Families

PF00091Tubulin

Tubulin/FtsZ family, GTPase domain

ClanCL0063NADP_Rossmann

PF10644Misat_Tub_SegII

Misato Segment II tubulin-like domain

ClanCL0063NADP_Rossmann

External Links

AlphaFold DB: Q13509 UniProt: Q13509

Representative

This domain is classified based on similarity to:

Downloads

Download Domain PDB Download Domain FASTA Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 1-240

drugDrugBank DB04845within 5 Å only

DB12695

drugDrugBank DB12695within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.