ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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P11388_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/P11388_F1_nD2

P11388_F1_nD2

UID: 003558791

AlphaFold

Range: 266-425
AlphaFold: AF-P11388
UniProt: P11388 (all domains)
Gene: TOP2A

Protein: DNA topoisomerase 2-alpha (EC 5.6.2.2) (DNA topoisomerase II, alpha isozyme)

3D Structure

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Related Domains

Browse other domains in DNA_gyraseB →

Classification

AArchitecturea+b two layers(a.11)

XX-groupRibosomal protein S5 domain 2-like(212)

HH-groupRibosomal protein S5 domain 2-like(212.1)

TT-groupRibosomal protein S5 domain 2-like(212.1.1)

FFamilyDNA_gyraseB(212.1.1.2)

Ligands

in contact, ≤ 4 Å

Amsacrine
drugDrugBank DB00276within 5 Å only
Dexrazoxane
drugDrugBank DB00380within 5 Å only
DB00385

Pfam Families

PF00204DNA_gyraseB

DNA gyrase B

ClanCL0329S5

External Links

AlphaFold DB: P11388 UniProt: P11388

Representative

This domain is classified based on similarity to:

Downloads

Download Domain PDB Download Domain FASTA Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 266-425

drugDrugBank DB00385within 5 Å only

Teniposide

drugDrugBank DB00444within 5 Å only

DB00445

drugDrugBank DB00445within 5 Å only

DB00467

drugDrugBank DB00467within 5 Å only

DB00487

drugDrugBank DB00487within 5 Å only

Trovafloxacin

drugDrugBank DB00685within 5 Å only

Daunorubicin

drugDrugBank DB00694within 5 Å only

DB00978

drugDrugBank DB00978within 5 Å only

Doxorubicin

drugDrugBank DB00997within 5 Å only

DB01059

drugDrugBank DB01059within 5 Å only

DB01165

drugDrugBank DB01165within 5 Å only

Idarubicin

drugDrugBank DB01177within 5 Å only

Podofilox

drugDrugBank DB01179within 5 Å only

DB01208

drugDrugBank DB01208within 5 Å only

Genistein

drugDrugBank DB01645within 5 Å only

DB04576

drugDrugBank DB04576within 5 Å only

DB04967

drugDrugBank DB04967within 5 Å only

DB04975

drugDrugBank DB04975within 5 Å only

DB05022

drugDrugBank DB05022within 5 Å only

DB05129

drugDrugBank DB05129within 5 Å only

DB05706

drugDrugBank DB05706within 5 Å only

DB06013

drugDrugBank DB06013within 5 Å only

DB06263

drugDrugBank DB06263within 5 Å only

DB06362

drugDrugBank DB06362within 5 Å only

DB06420

drugDrugBank DB06420within 5 Å only

DB06421

drugDrugBank DB06421within 5 Å only

DB09047

drugDrugBank DB09047within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.