ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q13002_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/Q13002_F1_nD2

Q13002_F1_nD2

UID: 003571266

AlphaFold

Range: 151-280,386-430
AlphaFold: AF-Q13002
UniProt: Q13002 (all domains)
Gene: GRIK2

Protein: Glutamate receptor ionotropic, kainate 2 (GluK2) (Excitatory amino acid receptor 4) (EAA4) (Glutamate receptor 6) (GluR-6) (GluR6)

3D Structure

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Related Domains

Browse other domains in ANF_receptor →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupPeriplasmic binding protein-like I(2007.1.2)

FFamilyANF_receptor(2007.1.2.4)

Ligands

in contact, ≤ 4 Å

Glutamic acid
drugDrugBank DB00142within 5 Å only
DB00237
drugDrugBank DB00237within 5 Å only
DB00241

Pfam Families

PF01094ANF_receptor

Receptor family ligand binding region

ClanCL0144Periplas_BP

External Links

AlphaFold DB: Q13002 UniProt: Q13002

Representative

This domain is classified based on similarity to:

Downloads

Download Domain PDB Download Domain FASTA Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 151-280,386-430

drugDrugBank DB00241within 5 Å only

DB00306

drugDrugBank DB00306within 5 Å only

DB00312

drugDrugBank DB00312within 5 Å only

DB00418

drugDrugBank DB00418within 5 Å only

Metharbital

drugDrugBank DB00463within 5 Å only

DB00599

drugDrugBank DB00599within 5 Å only

DB00794

drugDrugBank DB00794within 5 Å only

DB00849

drugDrugBank DB00849within 5 Å only

Phenobarbital

drugDrugBank DB01174within 5 Å only

DB01351

drugDrugBank DB01351within 5 Å only

DB01352

drugDrugBank DB01352within 5 Å only

DB01353

drugDrugBank DB01353within 5 Å only

DB01354

drugDrugBank DB01354within 5 Å only

DB01355

drugDrugBank DB01355within 5 Å only

DB01483

drugDrugBank DB01483within 5 Å only

DB01496

drugDrugBank DB01496within 5 Å only

Domoic Acid

drugDrugBank DB02852within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.