ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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J9FKW3_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/J9FKW3_F1_nD1

J9FKW3_F1_nD1

UID: 003583125

AlphaFold

Range: 6-350
AlphaFold: AF-J9FKW3
UniProt: J9FKW3 (all domains)
Gene: WBA_LOCUS10629

Protein: Nonsense-mediated mRNA decay factor SMG8

3D Structure

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Related Domains

Browse other domains in Smg8_Smg9 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilySmg8_Smg9(2004.1.1.171)

Pfam Families

PF10220Smg8_Smg9

Smg8_Smg9

External Links

AlphaFold DB: J9FKW3 UniProt: J9FKW3

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 6-350