ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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J9FKW3_F1_nD3 - ECOD Domain | ECOD

ECOD/Domains/J9FKW3_F1_nD3

J9FKW3_F1_nD3

UID: 003583126

AlphaFold

Range: 436-500,736-775,807-955
AlphaFold: AF-J9FKW3
UniProt: J9FKW3 (all domains)
Gene: WBA_LOCUS10629

Protein: Nonsense-mediated mRNA decay factor SMG8

3D Structure

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Related Domains

Browse other domains in Smg8_Smg9 →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupImmunoglobulin/Fibronectin type III/E set domains/PapD-like(11.1.1)

FFamilySmg8_Smg9(11.1.1.923)

Pfam Families

PF10220Smg8_Smg9

Smg8_Smg9

External Links

AlphaFold DB: J9FKW3 UniProt: J9FKW3

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 436-500,736-775,807-955