ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

A0A133CGU9_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/A0A133CGU9_F1_nD1

A0A133CGU9_F1_nD1

UID: 003587031

AlphaFold

Range: 6-210,366-440
AlphaFold: AF-A0A133CGU9
UniProt: A0A133CGU9 (all domains)
Gene: rnjA

Protein: Ribonuclease J (RNase J) (EC 3.1.-.-)

3D Structure

Loading viewer...

Related Domains

Browse other domains in Lactamase_B,RMMBL →

Classification

AArchitecturea+b four layers(a.13)

XX-groupMetallo-hydrolase/oxidoreductase(247)

HH-groupMetallo-hydrolase/oxidoreductase(247.1)

TT-groupMetallo-hydrolase/oxidoreductase(247.1.1)

FFamilyLactamase_B,RMMBL(247.1.1.2)

Pfam Families

PF00753Lactamase_B

Metallo-beta-lactamase superfamily

ClanCL0381Metallo-HOrase

Zn-dependent metallo-hydrolase RNA specificity domain

ClanCL0398RMMBL_DRMBL

External Links

AlphaFold DB: A0A133CGU9 UniProt: A0A133CGU9

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 6-210,366-440