ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

E9KIK3_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/E9KIK3_F1_nD2

E9KIK3_F1_nD2

UID: 003588710

AlphaFold

Range: 321-395
AlphaFold: AF-E9KIK3
UniProt: E9KIK3 (all domains)
Gene: rsmF

Protein: Methyltransferase (NOL1/NOP2/sun family putative RNA methylase) (rRNA (Cytosine-C(5)-)-methyltransferase (EC 2.1.1.-)) (tRNA/rRNA methyltransferase)

3D Structure

Loading viewer...

Related Domains

Browse other domains in RsmF_methylt_CI →

Classification

AArchitecturea+b two layers(a.11)

XX-groupCystatin-like(243)

HH-groupPre-PUA domain(243.6)

TT-groupPre-PUA domain(243.6.1)

FFamilyRsmF_methylt_CI(243.6.1.3)

Pfam Families

PF17126RsmF_methylt_CI

RsmF rRNA methyltransferase first C-terminal domain

ClanCL0668Pre-PUA

External Links

AlphaFold DB: E9KIK3 UniProt: E9KIK3

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 321-395