ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

A4HYM5_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/A4HYM5_F1_nD1

A4HYM5_F1_nD1

UID: 003592967

AlphaFold

Range: 116-370
AlphaFold: AF-A4HYM5
UniProt: A4HYM5 (all domains)
Gene: LINJ_20_0490

Protein: Ribosomal RNA-processing protein 8 (EC 2.1.1.-)

3D Structure

Loading viewer...

Related Domains

Browse other domains in Methyltransf_8 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyMethyltransf_8(2003.1.5.45)

Pfam Families

PF05148Methyltransf_8

Hypothetical methyltransferase

ClanCL0063NADP_Rossmann

External Links

AlphaFold DB: A4HYM5 UniProt: A4HYM5

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 116-370