ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q58095_F1_nD3 - ECOD Domain | ECOD

ECOD/Domains/Q58095_F1_nD3

Q58095_F1_nD3

UID: 003602467

AlphaFold

Range: 341-470,531-540
AlphaFold: AF-Q58095
UniProt: Q58095 (all domains)
Gene: rtcB

Protein: tRNA-splicing ligase RtcB (EC 6.5.1.8) (3'-phosphate/5'-hydroxy nucleic acid ligase) [Cleaved into: Mja hyp2 intein (EC 3.1.-.-)]

3D Structure

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Related Domains

Browse other domains in LAGLIDADG_3 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupHoming endonucleases-like(242)

HH-groupHoming endonucleases(242.1)

TT-groupHoming endonucleases(242.1.1)

FFamilyLAGLIDADG_3(242.1.1.7)

Pfam Families

PF14528LAGLIDADG_3

LAGLIDADG-like domain

ClanCL0324Homing_endonuc

External Links

AlphaFold DB: Q58095 UniProt: Q58095

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 341-470,531-540