ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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UT Southwestern
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Q59062_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q59062_F1_nD1

Q59062_F1_nD1

UID: 003603808

AlphaFold

Range: 1-170,191-260
AlphaFold: AF-Q59062
UniProt: Q59062 (all domains)
Gene: csm4

Protein: CRISPR system Cms protein Csm4 (CRISPR type III-A associated RAMP protein Csm4)

3D Structure

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Related Domains

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Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupCRISPR transcript (pre-crRNA) processing endoribonuclease-related(304.51)

TT-groupCRISPR transcript (pre-crRNA) processing endoribonuclease-related(304.51.1)

FFamilyRAMPs(304.51.1.2)

Pfam Families

RAMP superfamily

ClanCL0362RAMPS-Cas5-like

External Links

AlphaFold DB: Q59062 UniProt: Q59062

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 1-170,191-260