ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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C1GXX3_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/C1GXX3_F1_nD1

C1GXX3_F1_nD1

UID: 003632871

AlphaFold

Range: 41-110
AlphaFold: AF-C1GXX3
UniProt: C1GXX3 (all domains)
Gene: PAAG_03256

Protein: RNA polymerase II transcription factor B subunit 3 (RNA polymerase II transcription factor B 38 kDa subunit) (RNA polymerase II transcription factor B p38 subunit)

3D Structure

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Related Domains

Browse other domains in zf-C3HC4_5 →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRING/U-box-like(376)

HH-groupRING/U-box-like(376.1)

TT-groupRING/U-box(376.1.1)

FFamilyzf-C3HC4_5(376.1.1.31)

Pfam Families

PF17121zf-C3HC4_5

Zinc finger, C3HC4 type (RING finger)

ClanCL0229RING

External Links

AlphaFold DB: C1GXX3 UniProt: C1GXX3

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 41-110