ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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UT Southwestern
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C1H3B2_F1_nD3 - ECOD Domain | ECOD

ECOD/Domains/C1H3B2_F1_nD3

C1H3B2_F1_nD3

UID: 003634922

AlphaFold

Range: 406-800
AlphaFold: AF-C1H3B2
UniProt: C1H3B2 (all domains)
Gene: PAAG_05255

Protein: tRNA 4-demethylwyosine synthase (AdoMet-dependent) (EC 4.1.3.44)

3D Structure

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Related Domains

Browse other domains in Radical_SAM,Wyosine_form →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyRadical_SAM,Wyosine_form(2002.1.1.123)

Pfam Families

PF04055Radical_SAM

Radical SAM superfamily

ClanCL0036TIM_barrel

PF08608Wyosine_form

Wyosine base formation

External Links

AlphaFold DB: C1H3B2 UniProt: C1H3B2

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 406-800