ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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A0A0A2VKP8_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/A0A0A2VKP8_F1_nD2

A0A0A2VKP8_F1_nD2

UID: 003637358

AlphaFold

Range: 86-130,286-330
AlphaFold: AF-A0A0A2VKP8
UniProt: A0A0A2VKP8 (all domains)
Gene: PAAG_11819

Protein: tRNA-splicing endonuclease subunit Sen2 (EC 4.6.1.16)

3D Structure

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Related Domains

Browse other domains in tRNA_int_endo_N →

Classification

AArchitecturea+b two layers(a.11)

XX-groupHoming endonucleases-like(242)

HH-grouptRNA-intron endonuclease N-terminal domain-like(242.2)

TT-grouptRNA-intron endonuclease N-terminal domain-like(242.2.1)

FFamilytRNA_int_endo_N(242.2.1.2)

Pfam Families

PF02778tRNA_int_endo_N

tRNA intron endonuclease, N-terminal domain

ClanCL0476tRNA-IECD_N

External Links

AlphaFold DB: A0A0A2VKP8 UniProt: A0A0A2VKP8

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 86-130,286-330