ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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A0A1D6I6Y0_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/A0A1D6I6Y0_F1_nD1

A0A1D6I6Y0_F1_nD1

UID: 003641433

AlphaFold

Range: 16-460
AlphaFold: AF-A0A1D6I6Y0
UniProt: A0A1D6I6Y0 (all domains)
Gene: ZEAMMB73_Zm00001d020931

Protein: Polygalacturonase

3D Structure

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Related Domains

Browse other domains in Glyco_hydro_28,Pectate_lyase_3 →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupSingle-stranded right-handed beta-helix(207)

HH-groupPectin lyase-like(207.2)

TT-groupPectin lyase-like(207.2.1)

FFamilyGlyco_hydro_28,Pectate_lyase_3(207.2.1.2)

Pfam Families

PF00295Glyco_hydro_28

Glycosyl hydrolases family 28

ClanCL0268Pec_lyase-like

PF12708Pect-lyase_RHGA_epim

Rhamnogalacturonase A/epimerase, pectate lyase-like

ClanCL0268Pec_lyase-like

External Links

AlphaFold DB: A0A1D6I6Y0 UniProt: A0A1D6I6Y0

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 16-460