ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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A0A1D6LL53_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/A0A1D6LL53_F1_nD1

A0A1D6LL53_F1_nD1

UID: 003642145

AlphaFold

Range: 91-180
AlphaFold: AF-A0A1D6LL53
UniProt: A0A1D6LL53 (all domains)
Gene: ZEAMMB73_Zm00001d026328

Protein: Nonsense-mediated mRNA decay factor SMG8

3D Structure

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Related Domains

Browse other domains in Smg8_Smg9 →

Classification

AArchitecturealpha bundles(a.7)

XX-groupInterferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain(621)

HH-groupInterferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain(621.1)

TT-groupInterferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain(621.1.1)

FFamilySmg8_Smg9(621.1.1.2)

Pfam Families

PF10220Smg8_Smg9

Smg8_Smg9

External Links

AlphaFold DB: A0A1D6LL53 UniProt: A0A1D6LL53

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 91-180