ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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B6SK06_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/B6SK06_F1_nD1

B6SK06_F1_nD1

UID: 003659238

AlphaFold

Range: 1-95
AlphaFold: AF-B6SK06
UniProt: B6SK06 (all domains)
Gene: LOC542355

Protein: Histone deacetylase 2b (Histone deacetylase HDT3)

3D Structure

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Related Domains

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Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyNPL(10.2.1.55)

Pfam Families

Nucleoplasmin-like domain

ClanCL0055Nucleoplasmin

External Links

AlphaFold DB: B6SK06 UniProt: B6SK06

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 1-95