ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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A0A1D6HV78_F1_nD11 - ECOD Domain | ECOD

ECOD/Domains/A0A1D6HV78_F1_nD11

A0A1D6HV78_F1_nD11

UID: 003661229

AlphaFold

Range: 1156-1250
AlphaFold: AF-A0A1D6HV78
UniProt: A0A1D6HV78 (all domains)
Gene: ZEAMMB73_Zm00001d019108

Protein: Protein RRP5 homolog (Programmed cell death protein 11) (Ribosomal RNA-processing protein 5) (rRNA biogenesis protein RRP5)

3D Structure

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Related Domains

Browse other domains in OB_PDCD11 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupOB-fold(2)

HH-groupNucleic acid-binding protein(2.1)

TT-groupNucleic acid-binding protein(2.1.1)

FFamilyOB_PDCD11(2.1.1.226)

Pfam Families

PF29086OB_PDCD11

Protein RRP5 homolog-like, OB domain

ClanCL0021OB

External Links

AlphaFold DB: A0A1D6HV78 UniProt: A0A1D6HV78

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 1156-1250