ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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UT Southwestern
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A0A1D6PK18_F1_nD4 - ECOD Domain | ECOD

ECOD/Domains/A0A1D6PK18_F1_nD4

A0A1D6PK18_F1_nD4

UID: 003662293

AlphaFold

Range: 486-595
AlphaFold: AF-A0A1D6PK18
UniProt: A0A1D6PK18 (all domains)
Gene: ZEAMMB73_Zm00001d048415

Protein: Splicing factor CC1-like

3D Structure

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Related Domains

Browse other domains in RRM_1, RBM39linker →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupRNA-binding domain, RBD(304.9)

TT-groupRNA-binding domain, RBD(304.9.1)

FFamilyRRM_1, RBM39linker(304.9.1.83)

Pfam Families

RNA recognition motif

ClanCL0221RRM

PF15519RBM39linker

linker between RRM2 and RRM3 domains in RBM39 protein

External Links

AlphaFold DB: A0A1D6PK18 UniProt: A0A1D6PK18

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 486-595