ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q9M4U5_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q9M4U5_F1_nD1

Q9M4U5_F1_nD1

UID: 003662842

AlphaFold

Range: 1-95
AlphaFold: AF-Q9M4U5
UniProt: Q9M4U5 (all domains)
Gene: HDT2

Protein: Histone deacetylase HDT2 (Histone deacetylase 2b) (HD2b) (Zm-HD2b)

3D Structure

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Related Domains

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Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyNPL(10.2.1.55)

Pfam Families

Nucleoplasmin-like domain

ClanCL0055Nucleoplasmin

External Links

AlphaFold DB: Q9M4U5 UniProt: Q9M4U5

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 1-95