ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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A0A1D6MTP7_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/A0A1D6MTP7_F1_nD1

A0A1D6MTP7_F1_nD1

UID: 003670991

AlphaFold

Range: 11-135,241-260,476-490
AlphaFold: AF-A0A1D6MTP7
UniProt: A0A1D6MTP7 (all domains)
Gene: ZEAMMB73_Zm00001d040988

Protein: RNA-dependent RNA polymerase (EC 2.7.7.48)

3D Structure

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Related Domains

Browse other domains in RBD_RDR6 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupRNA-binding domain, RBD(304.9)

TT-groupRNA-binding domain, RBD(304.9.1)

FFamilyRBD_RDR6(304.9.1.98)

Pfam Families

PF24572RBD_RDR6

RNA-dependent RNA polymerase 6, RNA-binding domain

ClanCL0221RRM

External Links

AlphaFold DB: A0A1D6MTP7 UniProt: A0A1D6MTP7

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 11-135,241-260,476-490