ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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A0A1D6HV78_F1_nD16 - ECOD Domain | ECOD

ECOD/Domains/A0A1D6HV78_F1_nD16

A0A1D6HV78_F1_nD16

UID: 003679828

AlphaFold

Range: 1696-2000
AlphaFold: AF-A0A1D6HV78
UniProt: A0A1D6HV78 (all domains)
Gene: ZEAMMB73_Zm00001d019108

Protein: Protein RRP5 homolog (Programmed cell death protein 11) (Ribosomal RNA-processing protein 5) (rRNA biogenesis protein RRP5)

3D Structure

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Related Domains

Browse other domains in HAT_Syf1_CNRKL1_C →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyHAT_Syf1_CNRKL1_C(109.4.1.890)

Pfam Families

PF23231HAT_Syf1_CNRKL1_C

Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat

ClanCL0020TPR

External Links

AlphaFold DB: A0A1D6HV78 UniProt: A0A1D6HV78

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 1696-2000