ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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UT Southwestern
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A0A1D6FT45_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/A0A1D6FT45_F1_nD1

A0A1D6FT45_F1_nD1

UID: 003681937

AlphaFold

Range: 146-245
AlphaFold: AF-A0A1D6FT45
UniProt: A0A1D6FT45 (all domains)
Gene: LOC103635834

Protein: Protein RNA-directed DNA methylation 3

3D Structure

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Related Domains

Browse other domains in Spt5-NGN →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupN-utilization substance G protein NusG, N-terminal domain(304.17)

TT-groupN-utilization substance G protein NusG, N-terminal domain(304.17.1)

FFamilySpt5-NGN(304.17.1.2)

Pfam Families

PF03439Spt5-NGN

Early transcription elongation factor of RNA pol II, NGN section

ClanCL0439NusG-like

External Links

AlphaFold DB: A0A1D6FT45 UniProt: A0A1D6FT45

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 146-245