ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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A0A1C1CM88_F1_nD9 - ECOD Domain | ECOD

ECOD/Domains/A0A1C1CM88_F1_nD9

A0A1C1CM88_F1_nD9

UID: 003686099

AlphaFold

Range: 1071-1125,1346-1470
AlphaFold: AF-A0A1C1CM88
UniProt: A0A1C1CM88 (all domains)
Gene: rpb1

Protein: DNA-directed RNA polymerase subunit (EC 2.7.7.6)

3D Structure

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Related Domains

Browse other domains in RNA_pol_Rpb1_5 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupcentral helical domain in RNA-polymerase beta-prime subunit(4954)

HH-groupcentral helical domain in RNA-polymerase beta-prime subunit(4954.1)

TT-groupcentral helical domain in RNA-polymerase beta-prime subunit(4954.1.1)

FFamilyRNA_pol_Rpb1_5(4954.1.1.1)

Pfam Families

PF04998RNA_pol_Rpb1_5

RNA polymerase Rpb1, domain 5

External Links

AlphaFold DB: A0A1C1CM88 UniProt: A0A1C1CM88

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 1071-1125,1346-1470