ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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A0A1C1CM88_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/A0A1C1CM88_F1_nD2

A0A1C1CM88_F1_nD2

UID: 003686100

AlphaFold

Range: 386-445
AlphaFold: AF-A0A1C1CM88
UniProt: A0A1C1CM88 (all domains)
Gene: rpb1

Protein: DNA-directed RNA polymerase subunit (EC 2.7.7.6)

3D Structure

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Related Domains

Browse other domains in RNA_pol_Rpb1_2 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupMoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase(275)

HH-groupMoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase(275.1)

TT-groupMoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase(275.1.1)

FFamilyRNA_pol_Rpb1_2(275.1.1.1)

Pfam Families

PF00623RNA_pol_Rpb1_2

RNA polymerase Rpb1, domain 2

External Links

AlphaFold DB: A0A1C1CM88 UniProt: A0A1C1CM88

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 386-445