ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

Q4DKR6_F1_nD5 - ECOD Domain | ECOD

ECOD/Domains/Q4DKR6_F1_nD5

Q4DKR6_F1_nD5

UID: 003704742

AlphaFold

Range: 386-630
AlphaFold: AF-Q4DKR6
UniProt: Q4DKR6 (all domains)
Gene: Tc00.1047053503957.120

Protein: Retrotransposon hot spot (RHS) protein, putative

3D Structure

Loading viewer...

Related Domains

Browse other domains in RHSP, RHS_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyRHSP, RHS_N(2004.1.1.427)

Pfam Families

Retrotransposon hot spot protein, P-loop domain

ClanCL0023P-loop_NTPase

Retrotransposon hot spot proteins N-terminal

External Links

AlphaFold DB: Q4DKR6 UniProt: Q4DKR6

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 386-630