ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3fedA2 - ECOD Domain | ECOD

ECOD/Domains/e3fedA2

e3fedA2

UID: 000370540

PDB

Range: A:46-107,A:336-578
PDB: 3FED chain A(all domains)
UniProt: Q9Y3Q0 (all domains)
Gene: NAALAD2

Molecule: Glutamate carboxypeptidase III

3D Structure

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Related Domains

Browse other domains in Peptidase_M28 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPhosphorylase/hydrolase-like(2011)

HH-groupZn-dependent exopeptidases(2011.1)

TT-groupZn-dependent exopeptidases(2011.1.1)

FFamilyPeptidase_M28(2011.1.1.8)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
(2S)-2-{[(S)-[(3S)-3-amino-3-carboxypropyl](hydroxy)phosphoryl]methyl}pentanedioic acidBIX
Calcium ionCA

Pfam Families

PF04389Peptidase_M28

Peptidase family M28

ClanCL0865ZnExoPePases

External Links

ECOD PDB View: 3FED RCSB PDB: 3FED PDBe: 3FED UniProt: Q9Y3Q0

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

Chloride ionCL

Zinc ionZN

metal

Shown in the structure viewer. Drug annotations from DrugDomain.