ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q4D8B1_F1_nD5 - ECOD Domain | ECOD

ECOD/Domains/Q4D8B1_F1_nD5

Q4D8B1_F1_nD5

UID: 003706141

AlphaFold

Range: 371-620
AlphaFold: AF-Q4D8B1
UniProt: Q4D8B1 (all domains)
Gene: Tc00.1047053505919.80

Protein: Retrotransposon hot spot (RHS) protein, putative

3D Structure

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Related Domains

Browse other domains in RHSP, RHS_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyRHSP, RHS_N(2004.1.1.427)

Pfam Families

Retrotransposon hot spot protein, P-loop domain

ClanCL0023P-loop_NTPase

Retrotransposon hot spot proteins N-terminal

External Links

AlphaFold DB: Q4D8B1 UniProt: Q4D8B1

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 371-620