ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

Q4D8U8_F1_nD3 - ECOD Domain | ECOD

ECOD/Domains/Q4D8U8_F1_nD3

Q4D8U8_F1_nD3

UID: 003706952

AlphaFold

Range: 401-575
AlphaFold: AF-Q4D8U8
UniProt: Q4D8U8 (all domains)
Gene: Tc00.1047053503781.60

Protein: tRNA pseudouridine synthase A, putative

3D Structure

Loading viewer...

Related Domains

Browse other domains in PseudoU_synth_2 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupPseudouridine synthase(304.102)

TT-groupPseudouridine synthase(304.102.1)

FFamilyPseudoU_synth_2(304.102.1.1)

Pfam Families

PF00849PseudoU_synth_2

RNA pseudouridylate synthase

ClanCL0649PseudoU_synth

External Links

AlphaFold DB: Q4D8U8 UniProt: Q4D8U8

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 401-575