ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q4DKU2_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/Q4DKU2_F1_nD2

Q4DKU2_F1_nD2

UID: 003712036

AlphaFold

Range: 56-80,166-485
AlphaFold: AF-Q4DKU2
UniProt: Q4DKU2 (all domains)
Gene: Tc00.1047053509769.110

Protein: tRNA carboxymethyluridine synthase (EC 2.3.1.311)

3D Structure

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Related Domains

Browse other domains in Radical_SAM,Radical_SAM_C →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyRadical_SAM,Radical_SAM_C(2002.1.1.126)

Pfam Families

PF04055Radical_SAM

Radical SAM superfamily

ClanCL0036TIM_barrel

PF16199Radical_SAM_C

Radical_SAM C-terminal domain

External Links

AlphaFold DB: Q4DKU2 UniProt: Q4DKU2

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 56-80,166-485