ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q4DME9_F1_nD3 - ECOD Domain | ECOD

ECOD/Domains/Q4DME9_F1_nD3

Q4DME9_F1_nD3

UID: 003715928

AlphaFold

Range: 196-440,526-565
AlphaFold: AF-Q4DME9
UniProt: Q4DME9 (all domains)
Gene: Tc00.1047053506443.150

Protein: Retrotransposon hot spot (RHS) protein, putative

3D Structure

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Related Domains

Browse other domains in RHSP, RHS_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyRHSP, RHS_N(2004.1.1.427)

Pfam Families

Retrotransposon hot spot protein, P-loop domain

ClanCL0023P-loop_NTPase

Retrotransposon hot spot proteins N-terminal

External Links

AlphaFold DB: Q4DME9 UniProt: Q4DME9

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 196-440,526-565