ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

Q4DPP3_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/Q4DPP3_F1_nD2

Q4DPP3_F1_nD2

UID: 003717235

AlphaFold

Range: 126-455
AlphaFold: AF-Q4DPP3
UniProt: Q4DPP3 (all domains)
Gene: Tc00.1047053506743.120

Protein: tRNA carboxymethyluridine synthase (EC 2.3.1.311)

3D Structure

Loading viewer...

Related Domains

Browse other domains in Radical_SAM,Radical_SAM_C →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyRadical_SAM,Radical_SAM_C(2002.1.1.126)

Pfam Families

PF04055Radical_SAM

Radical SAM superfamily

ClanCL0036TIM_barrel

PF16199Radical_SAM_C

Radical_SAM C-terminal domain

External Links

AlphaFold DB: Q4DPP3 UniProt: Q4DPP3

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 126-455