ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

A0A0D2HNN4_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/A0A0D2HNN4_F1_nD2

A0A0D2HNN4_F1_nD2

UID: 003736056

AlphaFold

Range: 31-40,121-275,301-370,486-540
AlphaFold: AF-A0A0D2HNN4
UniProt: A0A0D2HNN4 (all domains)
Gene: Z517_01448

Protein: RNA-binding S4 domain-containing protein

3D Structure

Loading viewer...

Related Domains

Browse other domains in PseudoU_synth_2 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupPseudouridine synthase(304.102)

TT-groupPseudouridine synthase(304.102.1)

FFamilyPseudoU_synth_2(304.102.1.1)

Pfam Families

PF00849PseudoU_synth_2

RNA pseudouridylate synthase

ClanCL0649PseudoU_synth

External Links

AlphaFold DB: A0A0D2HNN4 UniProt: A0A0D2HNN4

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 31-40,121-275,301-370,486-540