ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

Q09820_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q09820_F1_nD1

Q09820_F1_nD1

UID: 003740737

AlphaFold

Range: 241-335
AlphaFold: AF-Q09820
UniProt: Q09820 (all domains)
Gene: upf1

Protein: ATP-dependent helicase upf1 (EC 3.6.4.12) (EC 3.6.4.13) (Nonsense-mediated mRNA decay protein upf1) (Regulator of nonsense transcripts 1 homolog) (Up-frameshift suppressor 1)

3D Structure

Loading viewer...

Related Domains

Browse other domains in UPF1_1B_dom →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupAlanine racemase-C(1.1.7)

FFamilyUPF1_1B_dom(1.1.7.41)

Pfam Families

PF18141UPF1_1B_dom

RNA helicase UPF1, 1B domain

ClanCL0866ALR_C-like

External Links

AlphaFold DB: Q09820 UniProt: Q09820

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 241-335