ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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O42853_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/O42853_F1_nD1

O42853_F1_nD1

UID: 003741283

AlphaFold

Range: 16-175
AlphaFold: AF-O42853
UniProt: O42853 (all domains)
Gene: SPAC23A1.16c

Protein: Putative RNA polymerase II subunit B1 CTD phosphatase rtr1 (EC 3.1.3.16) (RNA polymerase II-associated protein 2 homolog rtr1)

3D Structure

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Related Domains

Browse other domains in RPAP2_Rtr1 →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRegulator of transcription protein Rtr1(3371)

HH-groupRegulator of transcription protein Rtr1(3371.1)

TT-groupRegulator of transcription protein Rtr1(3371.1.1)

FFamilyRPAP2_Rtr1(3371.1.1.1)

Pfam Families

PF04181RPAP2_Rtr1

Rtr1/RPAP2 family

External Links

AlphaFold DB: O42853 UniProt: O42853

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 16-175