ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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O13935_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/O13935_F1_nD1

O13935_F1_nD1

UID: 003743123

AlphaFold

Range: 16-360,406-440
AlphaFold: AF-O13935
UniProt: O13935 (all domains)
Gene: trm4b

Protein: Multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4b (EC 2.1.1.-) (tRNA (cytosine-5-)-methyltransferase trm4b)

3D Structure

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Related Domains

Browse other domains in Methyltr_RsmB-F →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyMethyltr_RsmB-F(2003.1.5.6)

Pfam Families

PF01189Methyltr_RsmB-F

16S rRNA methyltransferase RsmB/F

ClanCL0063NADP_Rossmann

External Links

AlphaFold DB: O13935 UniProt: O13935

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 16-360,406-440