ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3itbD3 - ECOD Domain | ECOD

ECOD/Domains/e3itbD3

e3itbD3

UID: 000375226

PDB

Range: D:2-36,D:156-258
PDB: 3ITB chain D(all domains)
UniProt: P08506 (all domains)
Gene: dacC

Molecule: D-alanyl-D-alanine carboxypeptidase DacC

3D Structure

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Related Domains

Browse other domains in Peptidase_S11 →

Classification

AArchitecturea+b three layers(a.12)

XX-groupProfilin-like(223)

HH-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3)

TT-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3.1)

FFamilyPeptidase_S11(223.3.1.2)

Ligands

in contact, ≤ 4 Å

methyl 2-acetamido-3-O-[(1R)-1-carboxyethyl]-2-deoxy-beta-D-glucopyranosideAMV
within 5 Å only

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer.

Pfam Families

PF00768Peptidase_S11

D-alanyl-D-alanine carboxypeptidase

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 3ITB RCSB PDB: 3ITB PDBe: 3ITB UniProt: P08506

Downloads

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Drug annotations from DrugDomain.