ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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A0A0G2JVX1_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/A0A0G2JVX1_F1_nD2

A0A0G2JVX1_F1_nD2

UID: 003762058

AlphaFold

Range: 111-290
AlphaFold: AF-A0A0G2JVX1
UniProt: A0A0G2JVX1 (all domains)
Gene: Slx4ip

Protein: LINE-1 retrotransposable element ORF1 protein (LINE retrotransposable element 1) (LINE1 retrotransposable element 1)

3D Structure

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Related Domains

Browse other domains in Transposase_22 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupRNA-binding domain, RBD(304.9)

TT-groupRNA-binding domain, RBD(304.9.1)

FFamilyTransposase_22(304.9.1.5)

Pfam Families

PF02994Transposase_22

L1 transposable element RBD-like domain

ClanCL0221RRM

External Links

AlphaFold DB: A0A0G2JVX1 UniProt: A0A0G2JVX1

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 111-290