ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

Q5PQS6_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q5PQS6_F1_nD1

Q5PQS6_F1_nD1

UID: 003763642

AlphaFold

Range: 176-435,461-520
AlphaFold: AF-Q5PQS6
UniProt: Q5PQS6 (all domains)
Gene: Smg9

Protein: Nonsense-mediated mRNA decay factor SMG9

3D Structure

Loading viewer...

Related Domains

Browse other domains in Smg8_Smg9 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilySmg8_Smg9(2004.1.1.171)

Pfam Families

PF10220Smg8_Smg9

Smg8_Smg9

External Links

AlphaFold DB: Q5PQS6 UniProt: Q5PQS6

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 176-435,461-520