ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

B5DFD5_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/B5DFD5_F1_nD1

B5DFD5_F1_nD1

UID: 003764906

AlphaFold

Range: 16-95
AlphaFold: AF-B5DFD5
UniProt: B5DFD5 (all domains)
Gene: Mmp1

Protein: interstitial collagenase (EC 3.4.24.7)

3D Structure

Loading viewer...

Related Domains

Browse other domains in PG_binding_1 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupPGBD-like(144)

HH-groupPGBD-like(144.1)

TT-groupPGBD-like(144.1.1)

FFamilyPG_binding_1(144.1.1.1)

Pfam Families

PF01471PG_binding_1

Putative peptidoglycan binding domain

ClanCL0244PGBD

External Links

AlphaFold DB: B5DFD5 UniProt: B5DFD5

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 16-95