ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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O88766_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/O88766_F1_nD2

O88766_F1_nD2

UID: 003765965

AlphaFold

Range: 106-265
AlphaFold: AF-O88766
UniProt: O88766 (all domains)
Gene: Mmp8

Protein: Neutrophil collagenase (EC 3.4.24.34) (Matrix metalloproteinase-8) (MMP-8)

3D Structure

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Related Domains

Browse other domains in Peptidase_M10 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupZincin-like(2498)

HH-groupMetalloproteases ("zincins") catalytic domain(2498.1)

TT-groupMetalloproteases ("zincins") catalytic domain(2498.1.1)

FFamilyPeptidase_M10(2498.1.1.1)

Pfam Families

PF00413Peptidase_M10

Matrixin

ClanCL0126Peptidase_MA

External Links

AlphaFold DB: O88766 UniProt: O88766

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 106-265