ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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UT Southwestern
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Q5BJP4_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/Q5BJP4_F1_nD2

Q5BJP4_F1_nD2

UID: 003769353

AlphaFold

Range: 236-340,391-520
AlphaFold: AF-Q5BJP4
UniProt: Q5BJP4 (all domains)
Gene: Rbm39

Protein: RNA-binding protein 39 (RNA-binding motif protein 39)

3D Structure

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Related Domains

Browse other domains in RRM_1, RBM39linker →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupRNA-binding domain, RBD(304.9)

TT-groupRNA-binding domain, RBD(304.9.1)

FFamilyRRM_1, RBM39linker(304.9.1.83)

Pfam Families

RNA recognition motif

ClanCL0221RRM

PF15519RBM39linker

linker between RRM2 and RRM3 domains in RBM39 protein

External Links

AlphaFold DB: Q5BJP4 UniProt: Q5BJP4

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 236-340,391-520