ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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UT Southwestern
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F7F9J5_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/F7F9J5_F1_nD1

F7F9J5_F1_nD1

UID: 003775214

AlphaFold

Range: 51-270
AlphaFold: AF-F7F9J5
UniProt: F7F9J5 (all domains)
Gene: AABR07018556.1

Protein: LINE-1 retrotransposable element ORF1 protein (LINE retrotransposable element 1) (LINE1 retrotransposable element 1)

3D Structure

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Related Domains

Browse other domains in Transposase_22 →

Classification

AArchitecturealpha bundles(a.7)

XX-groupLong alpha-hairpin(192)

HH-groupEukaryotic DNA topoisomerase I, dispensable insert domain(192.8)

TT-groupEukaryotic DNA topoisomerase I, dispensable insert domain(192.8.1)

FFamilyTransposase_22(192.8.1.110)

Pfam Families

PF02994Transposase_22

L1 transposable element RBD-like domain

ClanCL0221RRM

External Links

AlphaFold DB: F7F9J5 UniProt: F7F9J5

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 51-270